Chemistry and Biochemistry

2011

R. Orihuela, B. Fernandez, O. Palacios, E. Valero, S. Atrian, R.K. Watt, J.M. Dominguez-Vera, M. Capdevila, “Ferritin an dmetallothionein: dangerous liaisons” Chem. Commun., 2011, volume 47, 12155-12157.

 
R.J. Hilton, N.D. Andros, R.K. Watt, “The ferroxidase center is essential for ferritin iron loading in the presence of phosphate and minimizes side reactions that form Fe(III)-phosphate colloids”, Biometals, 2011, Online.
 
P.S. Stewart, L. Rodriguez, D.H. Ess, “Electron correlation and the stability of substituted alkenes”, Journal of Physical Organic Chemistry2011, volume 24, 1222-1228.
 
J. Wu, J. Tao, D. Jiang, Z. Jin, D. Henderson, “A classical density functional theory for interfacial layering of ionic liquids”, Soft Matter2011, volume 7, 11222-11231.
 
D. Henderson, S. Lamperski, Z. Jin, J. Wu, “Density functional study of the electrical double layer formed by a high density electrolyte” J. Phys. Chem. B2011, volume 115, 12911-12914.
 

T. Nagy, D. Henderson, D. Boda, “Simulation of an Electrical Double Layer with a Low Dielectric Double Layer Between the Electrode and the Electrolyte”, J. Phys. Chem. B., 2011, volume 115, 11409-11419.

 

R. Orihuela, B. Fernandez, O. Palacios, E. Valero, S. Atrian, R.K. Watt, J.M. Dominguez-Vera, M. Capdevila, “Ferritin and metallothionein: dangerous liaisons” Chem. Commun., 2011, volume 47, 12155-12157.

 

R.J. Hilton, N.D. Andros, R.K. Watt, “The ferroxidase center is essential for ferritin iron loading in the presence of phosphate and minimizes side reactions that form Fe(III)-phosphate colloids”, Biometals, 2011, Online.

 

P.S. Stewart, L. Rodriguez, D.H. Ess, “Electron correlation and the stability of substituted alkenes”, Journal of Physical Organic Chemistry2011, volume 24, 1222-1228.

 

J. Wu, J. Tao, D. Jiang, Z. Jin, D. Henderson, “A classical density functional theory for interfacial layering of ionic liquids”, Soft Matter2011, volume 7, 11222-11231.

 

D. Henderson, S. Lamperski, Z. Jin, J. Wu, “Density functional study of the electrical double layer formed by a high density electrolyte” J. Phys. Chem. B2011, volume 115, 12911-12914.

 

T. Nagy, D. Henderson, D. Boda, “Simulation of an Electrical Double Layer with a Low Dielectric Double Layer Between the Electrode and the Electrolyte”, J. Phys. Chem. B., 2011, volume 115, 11409-11419.

 

D. Henderson, “Some Simple Results for the Properties of Polar Fluids”, Condensed Matter Physics2011, volume 14, 33001.

 

C.S. Ellis, D.H. Ess, “Computational Study on the Mechanism and Selectivity of C-H Bond Activation and Dehydrogenative Functionalization in the Synthesis of Rhazinilam”, J. Org. Chem2011, volume 76, pp. 7180-7185.

 

D.S. Jensen, V. Gupta, R.E. Olsen, A.T. Miller, R.C. Davis, D.H. Ess, Z. Zhu, M.A. Vail, A.E. Dadson, M.R. Linford, “Functionalization/passivation of porous graphitic carbon with di-tert-amylperoxide”, Journal of Chromatography A2011, volume 1218, pp.8362-8369.

 

J.R. Lattin, D.M Belnap, W.G. Pitt, “Formation of eLiposomes as a drug delivery vehicle”, Colloids and Surfaces B:Biointerfaces2011, volume 89, pp. 93-100.

 

J. Lin, N. Cheng, D.J. Filman, A.C.Steven, J.M. Hogle, D.M Belnap, “An Externalized Polypeptide Partitions between Two Distinct Sites on Genome-Released Poliovirus Particles”, Journal of Virology2011, volume 85, pp. 9974-9983.

 

J.L. Price, D.L. Powers, E.T. Powers, J.W. Kelly, “Glycosylation of the enhanced aromatic sequon is similarly stabilizing in three distinct reverse turn contexts”, Proc. Natl. Acad. Sci. USA2011, volume 108, pp. 14127-14132.

 

J. L. Price, E.T. Powers, J.W. Kelly, “N-PEGylation of a Reverse Turn is Stabilizing in Multiple Sequence Contezts unlike N-GlcNAcylation”, ACS Chem Biol2011.

 

L.B. Bhuiyan, D.Henderson, “Evidence for a second, local contact condition for a planar electric double layer containing size and valency asymmetric ions”, Molecular Physics2011, volume 109, pp. 1863-1871.

 

Y.Peng, B.J. Hansen, H. Quist, Z. Zhang, M. Wang, A.R. Hawkins, D.E. Austin, “Coaxial Ion Trap Mass Spectrometer: Concentric Toroidal and Quadrupolar Trapping Regions”, Analytical Chemistry2011, volume 83, pp. 5578-5584.

 

Y. Peng, D.E. Austin, “New approaches to miniaturizing ion trap mass analyzers”, Trends in Analytical Chemistry2011, volume 30, pp. 1560-1567.

 

M. Wang, H.E. Quist, B.J. Hansen, Y. Peng, Z. Zhang, A.R. Hawkins, A.L Rockwood, D.E. AustinM.L. Lee, “Performance of a Halo Ion Trap Mass Analzer with Exit Slits for Axial Ejection” J. Am. Soc. Mass Spectrom. 2011, volume 22, pp. 369-378.

 

Z.Zhang, H. Quist, Y. Peng, B. J. Hansen, J. Wang, A.R. Hawkins, D.E. Austin, “Effects of higher-order multipoles on the performance of a two-plate quadrupole ion trap mass analyzer”, International Journal of Mass Spectrometry2011, pp. 151-157.

 

A.D. Curtis, M.C. AsplundJ.E. Patterson, “Use of Variable Time-Delay Sum-Frequency Generation for Improved Spectroscopic Analysis”, Journal of Physical Chemistry, 2011, volume 115, pp. 19303-19310.

 

M.S. Heywood, N. Taylor, P.B. Farnsworth, “Measurement of Helium Metastable Atom Densities in a Plasma-Based Ambient Ionization Source”, Analytical Chemistry, 2011, volume 83, pp. 6493-6499.

 

D. Boda, D. Henderson, B. Eisenberg, D. Gillespie, “A method for treating the passage of a charged hard sphere ion as it passes through a sharp dielectric boundary”, Journal of Chemical Physics, 2011, volume 135, pp. 064105.

 

N.A. Demarse, C.F. Quinn, D.L. Eggett, D.J. Russell, L.D. Hansen, “Calibration of nanowatt isothermal titration calorimeters with overflow reaction vessels”, Analytical Biochemistry, 2011, volume 417, pp. 247-255.

 

M.H. Mayo, A.S. Nicholson, L.D. HansenJ.C. Hansen, “Chemical Treatment of Algae to Facilitate Biogas Production by Anaerobic Digestion”, Transactions of the ASABE, 2011, volume 54, pp. 1547-1550.

 

H.G. Lee, J.H. Lee, S.P. Jang, H.M. Park, S.J. Kim, Y. Kim, C. Kim, R.G. Harrison, “Zinc selective chemosensor based on pyridyl-amide fluorescence”, Tetrahedron, 2011, volume 67, pp. 8073-8078.

 

L.A. Wiest, D.S. Jensen, C.H. Hung, R.E. Olsen, R.C. Davis, M.A. Vail, A.E. Dadson, P.N. Nesterenkon, M.R. Linford, “Pellicular Particles with Spherical Carbon Cores and Porous Nanodiamond/Polymer Shells for Reversed-Phase HPLC”, Analytical Chemistry,2011, volume 83, pp. 5488-5501.

 

N. Barros, S. Feijoo, L. D. Hansen, “Calorimetric determination of metabolic heat, CO2 rates and the caloespirometric ratio of soil basal metabolism”, Geoderma, 2011, volume 160, pp. 542-547.

 

N.B. Luque, S. Woelki, D. Henderson, W. Schmickler, “A model for the electrical double layer combining integral equation techniques with quantum density functional theory”, Electrochimica Acta, 2011, volume 56, pp. 7298-7302.

 

N. Barros, S. Feijoo, L.D. Hansen, “Calorimetric determination of metabolic heat, CO2 rates and the calorespirometric ratio of soil basal metabolism”,Geoderma, 2011, volume 160, pp. 542-547.

 

Y. Geng, J. Liu, E. Pound, S. Gyawali, J.N. Harb, A.T. Woolley, “Rapid metallization of lambda DNA and DNA origami using a Pd seeding method”, Journal of Materials Chemistry, 2011, volume 21, pp. 1216-12131.

 

C.I. Rogers, J.V. Pagaduan, F.P. Nordin, A.T. Woolley, “Single-Monomer Formulation of Polymerized Polyethylene Glycol Diacrylate as a Nonadsorptive Material for Microfluidics”, Analytical Chemistry, 2011, volume 83, pp. 6418-6425.

 

L.A. Wiest, D.S. Jensen, C.H. Hung, R.E. Olsen, R.C. Davis, M.A. Vail, A.E. Dadson, P.N. Nesterenko, M.R. Linford, “Pellicular Particles with Spherical Carbon Cores and Porous Nanodiamond/Polymer Shells for Resersed-Phase HPLC”, Analytical Chemistry,2011, volume 83, pp. 5488-5501.

 

M.H. Mayo, A.D. Nicholson, L.D. HansenJ.C. Hansen, “Chemical Treatment of Algae to Facilitate Biogas Production by Anaerobic Digestion”, American Society of Agricultural and Biological Engineers, 2011, volume 54, pp. 1.

 

N. Barros, S. Feijoo, L.D. Hansen, “Calorimetric determination of metabolic heat, CO2 rates and the calorespirometric ratio of soil basal metabolism”, Geoderma, 2011, volume 160, pp. 542-547.

 

M.N. Hamblin, A.R. Hawkins, D. Murray, D. Maynes, M.L. LeeA.T. Woolley, H.D. Tolley, “Capillary flow in sacrificially etched nanochannels,” Biomicrofluidics, 2011, volume 5, 021103-1-6.

 

A.D. Curtis, S.R. Burt, A.R. Calchera, J.E. Patterson, “Limitations in the Analysis of Vibrational Sum-Frequency Spectra Arising from the Nonresonant Contribution”, The Journal of Physical Chemistry, 2011, volume 115, pp.11550-11559.

 

R.R. Anderson, W. Hu, J.W. Noh, W.C. Dahlquist, S.J. Ness, T.M. Gustafson, D.C. Richards, S. Kim, B.A. Mazzeo, A.T. Woolley, G.P. Nordin, “Transient deflection response in microcantilever array integrated with polydimethylsiloxane (PDMS) microfluidics”, Lab on a Chip, 2011, volume 11, pp. 2088-2096.

 

X. Chen, H.D. Tolley, M.L. Lee, “Monolithic capillary columns synthesized from a single phosphate-containing dimethacrylate monomer for cation-exchange chromatography of peptides and proteins”, Journal of Chromatography A, 2011, volume 1218, pp. 4322-4331.

 

S. Liu, D.H. Ess, C. Shauer, “Density Functional Reactivity Theory Characterizes Charge Separation Propensity in Proton-Coupled Electron Transfer Reactions”, J. Phys. Chem. A, 2011, volume 115, pp. 4738-4742.

 

F. Yang, D. Dearden. “Gas Phase Cucurbit[n]uril Chemistry”, Israel Journal of Chemistry2011, volume 51, pp.1-8.

 
A. Quast, F. Zhang, M.R. LinfordJ.T. Patterson. “Back-Surface Gold Mirrors for Vibrationally Resonant Sum-Frequency (VR-SFG) Spectroscopy Using 3-Mercaptopropyltrimethoxysilane as an Adhesion Promoter”, Applied Spectroscopy2011, volume 65, pp. 634-641.
 
P.S. Stewart, L. Rodriguez, D.H. Ess. “Electron Correlation and the Stability of Substituted Alkenes”, Journal of Physical Organic Chemistry, [online] 2011, volume 24/issue 5.
 
D.N. Mortensen, D.V. Dearden, “Influence of Charge Repulsion on Binding Strengths: Experimental and Computational Characterization of Mixed Alkali Metal Complexes of Decamethylcucurbit[5]uril in the Gas Phase”, Chem. Commun.2011, volume 47, pp. 6081-6083.
 
C.L. Snow, L.N. Martineau, R.J. Hilton, S. Brown, J. Farrer, J. Boerio-GoatesB.F. WoodfieldR.K. Watt. “Ferritin Ion Mineralization Proceeds by Different Mechanisms in MOPS and Imidazole Buffers”, Journal of Inorganic Chemistry2011, volume 105, pp. 972-977.
 
P.N. Nge, W. Yang, J.V. Pagaduan, A.T. Woolley. “Ion-permeable Membrane for On-chip Preconcentration and Separation of Cancer Market Proteins”, Electrophoresis2011, volume 32, pp. 1133-1140.
 
A.C. Pearson, E. Pound, A.T. WoolleyM.R. Linford, J.N. Harb, R.C. Davis. “Chemical Alignment of DNA Origami to Block Copolymer Patterned Arrays of 5 nm Gold Nanoparticles”, Nano Letters2011, volume 11, pp. 1981-1987.
 
M. Yu, Q. Wang, J.E. PattersonA.T. Woolley. “Multilayer Polymer Microchip Capillary Array Electrophoresis Devices with Integrated On-Chip Labeling for High-Throughput”, Analytical Chemistry2011, volume 83, pp. 3541-3547.
 
D.P. Walker, H.R. Vollmer-Snarr, D.L.D. Eberting. “Ocular Hazards of Blue-light Therapy in Dermatology”, Journal of the American Academy of Dermatology, [online] 2011, j.jaad.2010.11.040.
 
D. Henderson, S. Lamperski. “A Simple Description of the Capacitance of a High Concentration Electrolyte”, Journal of Chemical and Engineering Data2011, volume 56, pp. 1204-1208.
 
T. Nagy, M. Valisko, D. Henderson, D. Boda. “Behavior of 2:1 and 3:1 Electrolytes at Polarizable Interfaces”, Journal of Chemical and Engineering Data2011, volume 56, pp. 1316-1322.
 

S. Lamperski, D. Henderson. “Simulation Study of Capacitance of the Double Layer of an Electroyte near a Highly Charged Electrode”, Molecular Simulation2011, volume 37/issue 4, pp. 264-268.

 
L.B. Bhuiyan, D. Henderson. “A Local Semi-empirical Contact Condition for the Charge Profile in an Electric Double Layer with Size-asymmetric Ions at Low Electrode Charge”, Molecular Simulation2011, volume 37/issue 4, pp. 269-276.
 
D. Henderson, D. Boda. “Mean Spherical Approximation for the Yukawa Fluid Radial Distribution Function”, Molecular Physics2011, volume 109, pp. 1009-1013.
 
J. Liu, Y. Geng, E. Pound, S. Gyawali, J.R. Ashton, J. Hickey, A.T. Woolley, J.N. Harb. “Matellization of Branched DNA Origami for Nanoelectronic Circuit Fabrication”, ACSNano2011, volume 5/issue3, pp. 2240-2247.
 
R. Johne, P. Otto, B. Roth, U. Löhren, D. Belnap, J. Reetz, E. Trojnar. “Sequence Analysis of the VP6-encoding Genome Segment of Avian Group F and G Rotaviruses”, J. Virology2011, volume 412, pp. 384-391.
 
P.S. Stewart, M. Chen, W.R. Roush, D.H. Ess. “Thermodynamic Control of 1,3-Boratropic Shifts of a- and g-Stannyl-Substituted Allylboranes: Hyperconjugation Outweighs Steric Effects”, Org. Lett.2011, volume 13, pp. 1478-1481.
 
B.H. Kirk, D.H. Ess. “Quantum Mechanical Inspection of the Diels-Alder Approach to Biaryls Mechanism”, Tetrahedron Lett.2011, volume 52, pp. 1245-1249.
 
A. Paul, J.F. Hull, M.R. Norris, Z. Chen, D.H. Ess, J.J. Concepcion, T.J. Meyer. “Multiple Pathways for Benzyl Alcohol Oxidation by RuV═O3+ and RuIV═O2+”, J. Inorg. Chem.2011, volume 50, pp. 1167-1169.
 
A.G. Johnson, B.M. Loertscher, A.R. Moeck, S.S. Matthews, D.H. EssS.L. Castle. “Experimental and Theoretical Investigation of the Scope of Enantioselective Ketone Allylations Employing Nakamura’s Allylzinc-bisoxazoline Reagent”, Bioorg. Med. Chem. Lett.,2011, volume 21, pp. 2706-2710.

 

M. Wang, H. Quist, B.Hansen, Y. Peng, Z. Zhang, A. Hawkins, A. Rockwood, D.E. AustinM.L. Lee. “Performance of a Halo Ion Trap Mass Analyzer with Exit Slits for Axial Ejection”, Journal for American Society for Mass Spectrometry2011, volume 22, pp. 369-378.

 
J. Song, D. Jensen, D. Hutchison, B. Turner, T. Wood, A. Dadson, M. Vail, M.R. LinfordR. Vanfleet, R. Davis. “Carbon-Nanotube-Templated Microfabrication of Porous Silicon-Carbon Materials with Application to Chemical Separations”, Advanced Functionals Materials2011, volume 21, pp. 1132-1139.

 

X. Zhou, L. Shapiro, G. Fellingham, B.M. WillardsonG.F. Burton. “HIV Replication in CD4+ T lymphocytes in the Presence and Absence of Follicular dendritic Cells: Inhibition of Replication Mediated by α-1-Antitrypsin through Altered IκBα Ubiquitination.”Journal of Immunology2011, volume 186, pp. 3148-3155.

 
G. Jiang, F. Rivera, S.S. Kanyal, R.C. Davis, R. Vanfleet, B.M. Lunt, V. Shutthanadan, M.R. Linford, “Characterization of the plastic substrates, the reflective layers, the adhesives, and the grooves of today’s archival-grade recordable DVDs.” Optical Engineering,2011, volume 50, 015201, pp. 1-10.
 
Y. Li, H.D. Tolley, M.L. Lee, “Preparation of monoliths from single crosslinking monomers for reversed-phase capillary chromatography of small molecules.” Journal of Chromatography A2011 volume 1218, pp. 1399-1408.
 
A.N. Nackos, T.V. Truong, T.C. Pulsipher, J.A. Kimball, H.D. Tolley, R.A. Robison, C.H. Bartholomew, M.L. Lee, “One-step conversion of dipicolinic acid to its dimethyl ester using monomethyl sulfate salts for GC-MS detection of bacterial endospores.”  Analytical Methods2011, volume 3, pp.245-258.
 
J.R. Shelton, S.R. BurtM.A. Peterson, “A Broad Spectrum Anticancer Nucleoside with Selective Toxicity Against Human Colon Cells In Vitro.” Bioorganic and Medicinal Chemistry Letters2011, volume 21, pp. 1484-1487.
 
P.S. Shen, D. Enderlein, C.D.S. Nelson, W.S. Carter, M. Kawano, L.Xing, R.D. Swenson, N.H. Olson, T.S. Baker, R.H. Cheng, W.J. Atwood, R.Johne, D.M. Belnap, “The structure of avian polyomavirus reveals variably sized capsids, non-conserved inter-capsomere interations, and a possible location of the minor capsid protein VP4.” Virology2011, volume 411, pp. 142-152.
 
D. Henderson, “Understanding Liquids: Reflections about Melbourne, 1966-67.” Molecular Physics2011, volume 109, pp. 3-9.
 
Z. Mate, I. Szalai, D. Boda, D. Henderson, “Heat Capacities Of The Dipolar Yukawa Fluid.” Molecular Physics2011. volume 109, pp. 203-208.
 
S. Woelki, L.B.Bhuiyan, D. Henderson, “Application of the Singlet Reference Interaction Site Model to the Primitive Model Double Layer.”  Molecular Physics2011, volume 109, pp. 467-475.
 
D.Boda, J.Giri, D.Henderson, B.Eisenberg, D. Gillespie, “Analyzing the Components of the Free Energy Landscape in a Calcium Selective Ion Channel Binding by the Widom Insertion Method.” Journal of Chemical Physics2011, volume 134, p. 055102.
 
Above, also selected for publication online in JCP: Biochemical Physics2011, volume 5, Issue 2.
 
J.Giri, J. Fonseca, D. Boda, D. Henderson, B. Eisenberg, “Self-organized Models of Selectivity in Calcium Channels.” Physical Biology,2011, volume 8, p. 026004.
 
C.W. Hansen, L.D. Hansen, A.D. Nicholson, M.C. Chilton, N.Thomas, J.Clark, J.C.Hansen, “Correction for Instrument Time Constant and Baseline in Determination of Reaction Kinetics.” International Journal of Chemical Kinetics2011, volume 43, pp. 53-61.
 
M.L. Hopoate-Sitake, C.D. Adair, L.A. Mason, C.Torres, J. Kipikasa, S.W. Graves, “Digibind reverses inhibition of cellular Rb+ uptake caused by endogenous sodium pump inhibitors present in serum and placenta of women with preeclampsia.” Reproductive Sciences. 2011, volume 18, #2, pp. 190-199.

 

J. Johnson, J. Kenealey, R.J. Hilton, D. Brosnahan, R.K.Watt,  G.D.Watt, “Non-reductive iron release from horse spleen ferritin using desferoxamine chelation.”  Journal of Inorganic Biochemistry2011, volume 105, pp. 202-207.

 

L.D Hansen, G.W. Fellingham, D.J Russell, “Simultaneous determination of equilibrium constants and enthalpy changes by titration calorimetry: Methods, instruments, and uncertainties.” Analytical Biochemistry2011, volume 409, pp. 220-229.
 
D.H. Ess, S. Liu, F. De Proft, “Density-Functional Steric Analysis of Linear and Branched Alkanes.” Journal of Physical Chemistry A,2010, volume 114, pp.12952-12957.
 
D.H. Ess, W.A. Goddard III; R. A. Periana, “Electrophilic, Ambiphilic, and Nucleophilic C-H Bond Activation: Understanding the Electronic Continuum of C-H Bond Activation Through Transition-state and Reaction Pathway Interaction Energy Decompositions.”Organometallics2010, volume 29, pp. 6459-6472.
 
Z. Zhang, H. Quist, Y. Peng, B.J. Hansen, J. Wang, A.R. Hawkins, D.E. Austin, “Effects of higher-order multipoles on the performance of a two-plate quadrupole ion trap mass analyzer.” International Journal of Mass Spectrometry2011, volume 299, pp. 151-157.
 
A.E. Yevenes, V. Marquez, R.K. Watt,Cloning and characterization of Chlorobium tepidum ferritin.” Biochimie2011, volume 93, pp. 352-360.
 
A.T. Woolley, M.G. Larsen, P. Nge, W. Yang, D.J. Eves, “A Microchip Capillary Electrophoresis Experiment for the Instrumental Analysis Laboratory.” Journal of Analytical Sciences Digital Library2011, volume 10061.
 
D.H. Ess, R.B. Gunnoew, T.R. Cundari, W.A. Goddard III, R.A. Periana, “Ligand Lone-Pair Influence on Hydrocarbon C—H Activation: A Computational Perspective.” Organometallics2010, volume 29, pp. 6801-6815.

D.H. Ess, E.R. Johnson, X. Hu, W. Yang, “Singlet—Triplet Energy Gaps for Diradicals from Fractional-Spin Density-Functional.”  J. Phys. Chem. A2011, volume 115, pp. 76-83.

 

G.D. Watt, D. Hansen, D. Dodson, M. Andrus, D. Wheeler, “Electrical energy from carbohydrate oxidation during viologen-catalyzed O2-oxidation: Mechanistic insights.” Renewable Energy2011, volume 36, pp. 1523-1528.

 

Thanks to the chemistry library team for providing links to each article.