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Chemistry and Biochemistry

John T. Prince

John Prince

Office: E114 BNSN
Office Phone: 801-422-7123
Lab Room: E140 (wet lab), E130 (MS), E120 (student offices)
Lab Phone: 801-422-9745
Email: jtprince@chem.byu.edu

Education:

BS, Brigham Young University (2000)

Ph.D., University of Texas, Austin (2008)

Postdoctoral, Howard Hughes Medical Institute Research Specialist, University of Colorado, Boulder (2008-2010)

Curriculum Vitae

Office Hours

Research:

For more information on Dr. Prince's lab and his research visit prince.openwetware.org

Publications:

Tracy CM, Gary AJ, Cuellar J, Shaw TS, Howlett AC, Taylor RM, Prince JT, Ahn NG, Valpuesta JM, Willardson BM. "Programmed cell death protein 5 interacts with the cytosolic chaperonin CCT to regulate ß-tubulin folding." J Biol Chem. 2013 Dec 27. [Epub ahead of print]

Smith R, Ventura D, Prince JT. "LC-MS alignment in theory and practic: a comprehensive algorithmic review." Brief Bioinform. 2013 Nov 21. [Epub ahead of print]

Noyce AB, Smith R, Dalgliesh J, Taylor RM, Erb KC, Okuda N, Prince JT. "Mspire-simulator: LC-MS shotgun proteomic simulator for creating realistic gold standard data." J Proteome. Res. 2013 Dec 6; 12(12)5742-9.

Smith ME, Tippets TS, Brassfield ES, Tucker BJ, Ockey A, Swensen AC, Anothonymuthu TS, Washburn TD, Kane DA, Prince JT, Bikman BT. "Mitochondrial fission mediates ceraminde-induced metabolic disruption in skeletal muscle." Biochem J. 2013 Dec 15; 456(3):427-39.

Taylor RM, Dance J, Taylor RJ, Prince JT. "Metriculator: quality assessment for mass spectrometry-based proteomics." Bioinformatics. 2013 Nov 15; 29(22):2948-9.

Smith R, Ventura D, Prince JT. "Controlling for counfounding variables in MS-omics protocol: why modularity matters." Brief Bioinform. 2013 Jul 27. [Epub ahead of print]

Smith R, Williamson R, Ventura D, Prince JT. "Rubabel: wrapping open Babel with Ruby." J Cheminform. 2013 Jul 24; 5(1):35.

Smith R, Anthonymuthu TS, Ventura D, Prince JT. "Statistical agglomeration: Peak summarization for direct infusion lipodomics." Bioinformatics. 2013 Jul 3. [Epub ahead of print]

Ogawa N, Taylor RM, Woodbury DJ, Prince JT. "Resolving double disulfide bond patterns in SNAP25B using liquid chromatography-ion trap mass spectometry." J Mass Spectrom. 2013 Jun 48(6): 660-8.

Smith R, Venture D, Prince JT. "Novel algorithms and the benefits of comparitive validation." Bioinformatics. 2013 Jun 15; 29(12):1583-1585. Epub 2013 Apr 14.

Erickson KA, Smith ME, Anthonymuthu TS, Evanson MJ, Brassfield ES, Hodson AE, Bressler MA, Tucker BJ, Thatcher MO, Prince JT, Hancock CR, Bikman BT. “AICAR inhibits ceramide biosynthesis in skeletal muscle.” Diabetol Metab Syndr. 2012 4(1):45.

Shen PS, Domek MJ, Sanz-García E, Makaju A, Taylor RM, Hoggan R, Culumber M, Oberg C, Breakwell DP, Prince JT, Belnap DM. “Sequence and Structural Characterization of Great Salt Lake Bacteriophage CW02, a Member of the T7-like Supergroup.” J Virol. 2012 May 16. [Epub ahead of print]

Prince JT, Ahn NG. “The case of the disappearing drug target.” Mol Cell. 2010 Feb 26;37(4):455-6.

Ramakrishnan SR, Vogel C, Prince JT, Li Z, Penalva LO, Myers M, Marcotte EM, Miranker DP, Wang R. “Integrating shotgun proteomics and mRNA expression data to improve protein identification.” Bioinformatics. 2009 Jun 1;25(11):1397-403. Epub 2009 Mar 24.

Prince JT, Marcotte EM. “Mspire: mass spectrometry proteomics in Ruby.” Bioinformatics. 2008 Dec 1;24(23):2796-7. Epub 2008 Oct 16.

Prince JT, Marcotte EM. “Chromatographic alignment of ESI-LC-MS proteomics data sets by ordered bijective interpolated warping.” Anal Chem. 2006 Sep 1;78(17):6140-52.

Wang R, Prince JT, Marcotte EM. “Mass spectrometry of the M. smegmatis proteome: protein expression levels correlate with function, operons, and codon bias.” Genome Res. 2005 Aug;15(8):1118-26.