Chemistry and Biochemistry

2017

Ess, D. H., Kelly, C. M., Fuller III, J. T., Macaulay, C. M., McDonald, R., Ferguson, M. J., Bischof, S. M., Sydora, O. L., Stradiotto, M., Turculet, L. (2017). Dehydrogenative B-H/C(sp3 )-H Benzylic Borylation within the Coordination Sphere of Platinum(II). GDCh Angewandte, 56, 6312--6316.

Linford, M. R., Denning, J. C., Cushman, C. V., Smith, N. J., Mack, P., Samha, H., Major, G. H., Nunney, T., Chatterjee, S. (2017). Trends in Advanced XPS Instrumentation. 2. Angle-Resolved XPS (AR-XPS) and XPS Surface Mapping. Vacuum Technology & Coating.

Linford, M. R., Denning, J. C., Cushman, C. V., Smith, N. J., Mack, P., Samha, H., Major, G. H., Nunney, T., Chatterjee, S. (2017). Trends in Advanced XPS Instrumentation. 2. Angle-Resolved XPS (AR-XPS) and XPS Surface Mapping. Vacuum Technology & Coating.

Swensen, A. C., Finnell, J., Orozco, C. M., Gross, A. J., Prince, J. T., Watt, R. K., Price, J. C. (2017). Whole Blood and Urine Bioactive Hepcidin-25 Determination using Liquid Chromatography Mass Spectrometry. Analytical Biochem, 517, 23-30. http://www.sciencedirect.com/science/article/pii/S0003269716303591

Savage, P. B., Deng, S., Kain, L., Pereira, C. S., Mata, S., Macedo, M. F., Bendelac, A., Teyton, L. (2017). Psychosine variants as antigens for natural killer T cells.. Chem. Sci..

Watt, R. K., Swensen, A. C., Finnell, J. G., Matias, C., Gross, A. J., Prince, J. T., Price, J. C. (2017). Whole blood and urine bioactive Hepcidin-25 determination using liquid chromatography mass spectrometry. Analytical Biochemistry.

Perego, A., Olsen, C., Peterson, J. R., Hansen, K., Colton, J. S., Watt, R. K. (2017). Fabrication of dye sensitized solar cells using native and non-native nanocrystals in ferritin as the dye. Journal of the Utah Academy of Sciences, Arts, & Letters, 93, 183-194.

Swensen, A. C., Finnell, J., Orozco, C. M., Gross, A. J., Prince, J. T., Watt, R. K., Price, J. C. (2017). Whole Blood and Urine Bioactive Hepcidin-25 Determination using Liquid Chromatography Mass Spectrometry. Analytical Biochem, 517, 23-30. http://www.sciencedirect.com/science/article/pii/S0003269716303591

Uprety, B., Westover, T., Stoddard, M., Brinkerhoff, K., Jenson, J., Davis, R. C., Woolley, A. T., Harb, J. N. (2017). Anisotropic Electroless Deposition on DNA Origami Templates to Form Small Diameter Conductive Nanowires. Langmuir, 33(3), 726–735.

Castle, S. L., Jackson, M. M., Cai, Y. (2017). Recent Advances in Iminyl Radical Cyclizations. Synthesis.

Linford, M. R., Cushman, C. V., Roberts, A. (2017). Trends in Advanced XPS Instrumentation. 3. The spherical mirror analyzer: obtaining spatially resolved XPS data without rastering. Vacuum Technology & Coating.

Mathis, A. D., Naylor, B. C., Carson, R. H., Evans, E., Harwell, J., Knecht, J., Hexem, E., Peelor, F. F., Miller, B. F., Hamilton, K. L., Transtrum, M. K., Bikman, B. T., Price, J. C. (2017). Mechanisms of in vivo ribosome maintenance respond to nutrient signals. Mol. Cell. Prot., 16(2), 243 - 254. www.mcponline.org/content/early/2016/12/08/mcp.M116.063255.full.pdf+html?sid=c7ef70b4-576f-4dc8-800b-25bcaa620cbc

Linford, M. R., Frederix, P. (2017). Surface Analysis by Atomic Force Microscopy (AFM): Its Various Modes, Capabilities, and Comparison to and Integration with other Techniques. Vacuum Technology & Coating.

Savage, P. B., Polonskaya, Z., Deng, S., Sarka, A., Kain, L., Comellas-Aragones, M., McKay, C., Kaczanowska, K., Holt, M., McBride, R., Palomo, V., Self, K., Taylor, S., Irimia, A., Mehta, S. R., Dan, J. M., Brigger, M., Crotty, S., Schoenberger, S. P., Paulson, J. C., Wilson, I. A., Finn, M. G., Teyton, L. (2017). Nanomolar affinity anti-glycan antibody generation is controlled by T cells.. . J. Clin. Invest.

Savage, P. B., Piktel, E., Pogoda, K., Roman, M., Niemirowicz, K., Tokajuk, G., Wróblewska, M., Szynaka, B., Bucki, R. (2017). Sporicidal activity of ceragenin CSA-13 against Bacillus subtilis.. Sci. Reports.

Watt, R. K., Matias, C., Belnap, D. W., Smith, M. T., Stewart, M. G., Torres, I. F., Gross, A. J. (2017). Citrate and albumin facilitate transferrin iron loading in the presence of phosphate. J. Inorg. Biochem.

Burt, S. R., Cryer, M., Lane, K., Cates, R., Andrus, M., Zou, J., Rogers, P., Hansen, M., Panayampalli, S., Burgado, J., Day, C., Smee, D., Allen, R., Johnson, F. B. (2017). Isolation and Identification of Compounds from Kalanchoe Pinnata Having HSV-2 and Vaccinia Antivirus Activity. Pharm.  Biol.

Austin, D. E., Wang, T., Zheng, Y., Wang, X., Wang, Q., Ke, C., Han, X., Zhang, Z. (2017). Abnormal adsorption and desorption behavior of pharmaceutical drugs on polystyrene microspheres. Royal Society of Chemistry/ RSC Advances.

Burt, S. R., Cryer, M., Lane, K., Cates, R., Andrus, M., Zou, J., Rogers, P., Hansen, M., Panayampalli, S., Burgado, J., Day, C., Smee, D., Allen, R., Johnson, F. B. (2017). Isolation and Identification of Compounds from Kalanchoe Pinnata Having HSV-2 and Vaccinia Antivirus Activity. Pharm.  Biol.

Linford, M. R., Nunney, T. N., Cushman, C., Major, G. H., Smith, N. J., Lunt, B. M., Chatterjee, S. (2017). Trends in Advanced XPS Instrumentation. 4. A Modern XPS Instrument and How to Manufacture it in just Four Days. Vacuum Technology & Coating..

Olsen, C. R., Embley, J. S., Hansen, K. R., Henrichsen, A. M., Peterson, J. R., Colton, J. S., Watt, R. K. (2017). Tuning ferritin’s band gap through mixed metal oxide nanoparticle formation. Nanotechnology, 28(19), 195604.

Austin, D. E., Wu, Q., Tian, Y. T., Li, A., Andrews, D., Hawkins, A. R. (2017). A Miniaturized Linear Wire ion trap with electron ionization and single photon ionization sources. American Society for Mass Spectrometry.

Lin, S., Voyton, C., Morris, M. T., Ackroyd, P. C., Morris, J. C., Christensen, K. A. (2017). pH Regulation in Glycosomes of Procyclic Form Trypanosoma brucei. Journal of Biological Chemistry. http://www.jbc.org/content/early/2017/03/27/jbc.M117.784173.abstract

Harrison, R. G., Jung, J. M., Lee, J. J., Lim, M. H., Nam, E., Kim, C., Harrison, R. G. (2017). A zinc fluorescent sensor used to detect mercury (II) and hydrosulfide. Spectrochimica Acta Part A: Molecular and Biomolecular  Spectroscopy.

Linford, M. R., Linford, M. G. (2017). A Case Study Illustrating Principles of Data Analysis (Chemometrics). Vacuum Technology & Coating..

Naylor, B. C., Porter, M. T., Wilson, E., Herring, A., Lofthouse, S., Hannemann, A., Piccolo, S. R., Piccolo, R. A., Price, J. C. (2017). DeuteRater: a Tool for Quantifying Peptide Isotope Precision and Kinetic Proteomics. Bioinformatics. academic.oup.com/bioinformatics/article/2908859/DeuteRater-a-Tool-for-Quantifying-Peptide-Isotope?searchresult=1

Savage, P. B., Hashemi, M. M., Holden, B. S., Durnás, B., Bucki, R. (2017). Ceragenins as mimics of endogenous antimicrobial peptides.. J. Antimicrob. Agents.

Stowers, K. J., Zhou, Z., Anderson, C. M., Butler, S. K., Thompson, S. K., Whitty, K. J., Shen, T. C. (2017). Stability and efficiency of CO2 capture using linear amine polymer modified carbon nanotubes. Journal of Materials Chemistry(5), 10486-10494.

Olsen, C. R., Smith, T. J., Embley, J. S., Maxfield, J. H., Hansen, K. R., Peterson, J. R., Henrichsen, A. M., Erickson, S. D., Buck, D. C., Colton, J. S., Watt, R. K. (2017). Permanganate-based synthesis of manganese oxide nanoparticles in ferritin. Nanotechnology, 28(19).

Woodfield, B. F., Albretsen, M. K., Huang, B., Keyvanloo, K., Bartholomew, C. H., Argyle, M. D., Hecker, W. C. (2017). Effect of Drying Temperature on Iron Fischer-Tropsch Catalysts Prepared by Solvent Deficient Precipitation (SDP). Journal of Nanomaterials.

Burt, S. R., Machicao, P. A., Christensen, R. K., Lohner, N. B., Singleton, J. D., Peterson, M. A. (2017). An Efficient Microwave Assisted Synthesis of N’-Aryl/(alkyl)- substituted N-(4-hydroxy-6-phenylpyrimidin-2-yl)guanidines: Scope and Limita-tions. Tetrahedron Letters.

Castle, S. L. (2017). Remodeling vancomycin yields a victory in the battle against bacteria. PNAS, 114(26).

Ess, D. H., Kwon, D.-H., Proctor, M., Medoza, S., Uyeda, C. (2017). Catalytic Dinuclear Nickel Spin Crossover Mechancism and Selectivity for Alkyne Cyclotrimerization. ACS Catalysis, 4796-4804.

Farnsworth, P. B., Spencer, R. L. (2017). Ion sampling and transport in ICP-MS. Spectrochimica acta. Part B.

Farnsworth, P. B., Spencer, R. L. (2017). Ion sampling and transport in ICP_MS. Spectrochimica Acta Part B.

Kang, H., Roeder, B. L., Martin, H. M., Anand, S., Cook, A. C., Lau, C. Y., Buckmiller, E. M., Brown, K. K., Eggett, D. L., Graves, S. W. (2017). A lipidomic approach reveals colostrum and milk biomarkers predictive of production-related metabolic disease.. Journal of Agriculture Life Sciences, 4(1), 1-15. www.jalsnet.com

Hecksher, T., Torchinsky, D. H., Klieber, C., Johnson, J. A., Dyre, J. C., Nelson, K. A. (2017). Toward broadband mechanical spectroscopy. http://www.pnas.org/content/early/2017/07/31/1707251114.abstract

Laulhé, C., Huber, T., Lantz, G., Ferrer, A., Mariager, S. O., Grübel, S., Rittmann, J., Johnson, J. A., Esposito, V., Lübcke, A., Huber, L., Kubli, M., Savoini, M., Jacques, V. L. R., Cario, L., Corraze, B., Janod, E., Ingold, G., Beaud, P., Johnson, S. L., Ravy, S. (2017). Ultrafast Formation of a Charge Density Wave State in $1T-TaS_2$: Observation at Nanometer Scales Using Time-Resolved X-Ray Diffraction. 118(24), 247401. https://link.aps.org/doi/10.1103/PhysRevLett.118.247401

Linford, M. R. (2017). The Chemomechanical Modification of Silicon with Macroscopic Diamond Tips and AFM Tips with Extension to Laser-Modification of the Material, Starting from Its Roots in Monolayers on Hydrogen-Terminated Silicon. Encyclopedia of Interfacial Chemistry: Surface Science and Electrochemistry.

Linford, M. R., Wang, H. (2017). MATLAB Programming, Part 1. Descriptions and Examples of Twenty-Five Useful Commands. Vacuum Technology & Coating.

Vanfleet, R. R., Laughlin, K. R., Jamieson, S. L., Pearson, A. C., Wang, H., Davis, R. C., Linford, M. R., Lunt, B. M. (2017). Thin-Film Carbon Nanofuses for Permanent Data Storage. ACS Omega, 2(6), 2432 - 2438.

Burt, S. R., Machicao, P. A., Christensen, R. K., Lohner, N. B., Singleton, J. D., Peterson, M. A. (2017). An Efficient Microwave Assisted Synthesis of N’-Aryl/(alkyl)- substituted N-(4-hydroxy-6-phenylpyrimidin-2-yl)guanidines: Scope and Limita-tions. Tetrahedron Letters.

Woodfield, B. F., Schliesser, J., Lilova, K. I., Pierce, E. M., Wu, L., Missimer, D. M., Navrotsky, A. (2017). Low temperature heat capacity and thermodynamic functions of anion bearing sodalities Na8Al6Si6O24X2 (X = SO4, ReO4, Cl, I). Journal of Chemical Thermodynamics.

Gordhan, H. M., Milanes, J. E., Qiu, Y., Golden, J. E., Christensen, K. A., Morris, J. C., Whitehead, D. C. (2017). A targeted delivery strategy for the development of potent trypanocides. Chemical Communications.

Anupriya, A., Gustafson, E., Mortensen, D. N. (2017). Quantitative Collision Cross-Sections from FTICR Linewidth Measurments: Improvements in Theory and Experiment. Am. Soc. Mass Spectrom.

Graves, S. W., Kang, H., Roeder, B. L., Martin, H. M., Anand, S., Cook, A. C., Lau, C. Y., Buckmiller, E. M., Brown, K. K., Eggett, D. L. (2017). Discovery and confirmation of diagnostic serum lipid biomarkers for Alzheimer’s disease using direct infusion mass spectrometry.. J Alzheimer’s Dis.

Linford, M. R., Jain, V. J., Sudy, J. E., Bingaman, D., Roychowdhury, T., Shah, D. (2017). Good Surface Characterization Starts with Good Sample Preparation - Poor Equipment Maintenance Leads to Poor Sample Quality. Vacuum Technology & Coating.

Anupriya, A., Gustafson, E., Mortensen, D. N. (2017). Quantitative Collision Cross-Sections from FTICR Linewidth Measurments: Improvements in Theory and Experiment. Am. Soc. Mass Spectrom.

Price, J. L., Smith, M. S., Billings, W. M., Whitby, F. G., Mille, M. B. (2017). Enhancing a long-range salt bridge with intermediate aromatic and nonpolar amino acids. Organic & Biomolecular Chemistry.

Savage, P. B., Durnás, B., Piktel, E., Watek, M., Wollny, T., Gózdz, S., Smok-Kalwat, J., Niemirowicz, K., Bucki, R. (2017). Anaerobic bacteria growth in the presence of cathelicidin LL-37 and selected ceragenins delivered as magnetic nanoparticles cargo.. BMC Microbiol.

Savage, P. B., Olekson, M. A., Tao, Y., Leung, K. P. (2017). Ceragenin peptide-mimics inhibit biofilms and affect mammalian cell bioability and migration in vitro.. FEBS Open Bio.

Savage, P. B., Piktel, E., Pogoda, K., Bucki, R. (2017). The search for new sporicidal agents for medical use: where are we?. Future Microbiol..

Woodfield, B. F. (2017). Heat Capacity. Encyclopedia of Geochemistry: A Comprehensive Reference Source on the Chemistry of the Earth.

Woolley, A. T., Nelson, D. B., Robison, R. A., Knob, R. (2017). Sequence-specific DNA solid-phase extraction in an on-chip monolith: Towards detection of antibiotic resistance genes. Journal of Chromatography A. dx.doi.org/10.1016/j.chroma.2017.07.028

Woolley, A. T., Gong, H., Bickham, B. P., Nordin, G. P. (2017). Custom 3D printer and resin for 18 μm × 20 μm microfluidic flow channels. Royal Society of Chemistry.

Woolley, A. T., Beauchamp, M. J., Nordin, G. P. (2017). Moving from millifluidic to truly microfluidic sub-100-μm cross-section 3D printed devices. Anal Bioanal Chem.

Woolley, A. T., Sonker, M., Knob, R., Sahore, V. (2017). Integrated electrokinetically driven microfluidic devices with pH-mediated solid-phase extraction coupled to microchip electrophoresis for preterm birth biomarkers. Electrophoresis.

Austin, D. E., Tian, Y., Decker, T. K., McCellan, J. S., Bennett, L., Li, A., De la Cruz, A., Andrews, D., Lammert, S. A., Hawkins, A. R. (2017). Improved Miniaturized Linear Ion Trap Mass Spectrometer Using Lithographically Patterned Plates and Tapered Ejection Slit.

Austin, D. E., Wang, T., Zheng, Y., Wang, X., Zhang, Z. (2017). Sub-ppt Mass Spectrometric Detection of Therapeutic Drugs in Complex Biological Matrixes Using Polystyrene-Microsphere-Coated Paper Spray. Analytical Chemistry.

Ess, D. H., King, C. R., Gustafson, S. J., Black, B. R., Butler, S. K., Konnick, M. M., Periana, R. A., Hashiguchi, B. M. (2017). Arene C–H Functionalization by p-Block Metal Tl(III) Occurs at the Borderline of C–H Activation and Electron Transfer. Organometallics, 36(1), 109–113. http://pubs.acs.org/doi/abs/10.1021/acs.organomet.6b00475

Linford, M. R., Johnson, B. I., Cushman, C. V., Rowley, J., Lunt, B. M., Smith, N. J., Martin, A. (2017). Optical Constants of SiO2 from 196 – 1688 nm (0.735 - 6.33 eV) from 20, 40, and 60 nm Films of Reactively Sputtered SiO2 on Eagle XG® Glass by Spectroscopic Ellipsometry. Surf. Sci. Spectra.

Linford, M. R., Cushman, C. V., Dahlquist, C. T., Dietrich, P., Bahr, S., Thißen, A., Schaff, O., Banerjee, J., Smith, N. J. (2017). Trends in Advanced XPS Instrumentation. 5. Near-Ambient Pressure XPS. Vacuum Technology & Coating.

Austin, D. E., Barney, B. L. (2017). Dynamics of rebounding Bacillus subtilis spores determined using image-charge detection. Journal of Biological Physics.

Linford, M. R., Kaykhaii, M. (2017). Application of Microextraction Techniques Including SPME and MESI to the Thermal Degradation of Polymers: A review. Critical Reviews in Analytical Chemistry, 172-176.

Linford, M. R., Roberts, A., Fairley, N., Johnson, B. I., Cushman, C. V. (2017). Trends in Advanced XPS Instrumentation. 6. Spectromicroscopy – A Technique for Understanding the Lateral Distribution of Surface Chemistry. Vacuum Technology & Coating.

Moody, J. D., Levy, S., Mathieu, J., Xing, Y., Kim, W., Dong, C., Tempel, W., Robitaille, A. M., Dang, L. T., Ferreccio, A., Detraux, D., Sidhu, S., Zhu, L., Carter, L., Xu, C., Valensisi, C., Wang, Y., Hawkins, R. D., Min, J., Moon, R. T., Orkin, S. H., Baker, D., Ruohola-Baker, H. (2017). First critical repressive H3K27me3 marks in embryonic stem cells identified using designed protein inhibitor., 201706907. http://dx.doi.org/10.1073/pnas.1706907114

Price, J. L., Smith, M. S., Lawrence, E., Billings, W. M., Larsen, K. S., Bécar, N. A. (2017). An Anion−π Interaction Strongly Stabilizes the β-Sheet Protein WW. ACS Chem. Biol.

Woodfield, B. F., Calvin, J. J., Asplund, M., Zhang, Y., Huang, B. (2017). Heat Capacity and Thermodynamic Functions of γ-Al2O3. Journal of Chemical Thermodynamics.

Woodfield, B. F., Czerniecka-Kubicka, A., Zarzyka, I., Schliesser, J., Popovic, M., Pyda, M. (2017). Molecular interpretation of low-temperature heat capacity of aliphatic oligo-urethane. Journal of Chemical Thermodynamics.

Woolley, A. T. (2017). The only constant is change. Anal Bioanal Chem.

Woolley, A. T., Uprety, B., Jensen, J., Aryal, B. R., Davis, R. C., Harb, J. N. (2017). Directional Growth of DNA-Functionalized Nanorods to Enable Continuous, Site-Specific Metallization of DNA Origami Templates. Langmuir, 10143–10152. http://pubs.acs.org/doi/abs/10.1021/acs.langmuir.7b01659

Woolley, A. T., Sonker, M., Sahore, V. (2017). Recent advances in microfluidic sample preparation and separation techniques for molecular biomarker analysis: A critical review. Analytica Chimica Act.

Uprety, B., Jensen, J., Aryal, B. R., Davis, R. C., Woolley, A. T., Hardman, E. (2017). Directional Growth of DNA-Functionalized Nanorods to Enable Continuous, Site-Specific Metallization of DNA Origami Templates. Langmuir, 33(39), 10143 - 10152.

Austin, D. E., Li, A., Higgs, J. M. (2017). Chaotic Motion of single ions in a toroidal ion trap mass analyzer. International Journal of Mass Spectrometry.

Castle, S. L., Jalan, A., Kastner, D. W., Webber, K., Smith, M. S., Price, J. L. (2017). Bulky Dehydroamino Acids Enhance Proteolytic Stability and Folding in β‐Hairpin Peptides. Organic Letters.

Spencer, R. L., Farnsworth, P. B. (2017). Ion sampling and transport in ICP-MS. Spectrochimica Acta Part B-Atomic Spectroscopy, 134, 105 - 122.

Harrison, R. G., Gordon, N., McGuire, K., Wallentine, S., Mohl, G., Lynch, J., Busath, D. (2017). Divalent copper complexes as influenza A inhibitors. Antiviral Research, 100-106.

Linford, M. R., Podraza, N. J. (2017). Archiving the Optical Constants of Materials with Surface Science Spectra. Vacuum Technology & Coating.

Savage, P. B., Hashemi, M. M., Rovig, J., Bateman, J., Holden, B. S., Modzelewski, T., Gueorguieva, I., von Dyck, M., Bracken, R., Genber, C., Deng, S. (2017). Preclinical testing of a broad-spectrum antimicrobial endotracheal tube coated with an innate immune synthetic mimic. Journal Antimicrob. Chemother.

Savage, P. B., Pogoda, K., Piktel, E., Deptula, P., Lekka, M., Bucki, R. (2017). Stiffening of bacterial cells of first manifestation of bactericidal attack.. Micron.

Woodfield, B. F., Calvin, J. J., Asplund, M., Akimbekov, Z., Ayoub, G., Katsenis, A. D., Navrotsky, A., Friscic, T. (2017). Heat Capacity and Thermodynamic Functions of Crystalline and Amorphous Forms of the Metal Organic Framework Zinc 2-Ethylimidazolate, Zn(EtIm)2. Journal of Chemical Thermodynamics.

Woodfield, B. F., Asplund, M., Calvin, J. J., Zhang, Y., Huang, B. (2017). Heat Capacity and Thermodynamic Functions of Silica-Doped γ-Al2O3. Journal of Chemical Thermodynamics.

Woodfield, B. F., Calvin, J. J., Asplund, M., Zhang, Y., Huang, B. (2017). Heat Capacity and Thermodynamics Functions of Boehmite (AlOOH) and Silica-doped Boehmite. Journal of Chemical Thermodynamics.

Ellis, W. C., Spencer, R. L., Reininger, C., Farnsworth, P. B. (2017). Computational model of a direct current glow discharge used as an ambient desorption/ionization source for mass spectrometry. J. Anal. At. Spectrom., 9.

Hansen, J. C., Cropper, P., Cary, R., Eatough, D. (2017). Development of the GC-MS Organic Aerosol Monitor (OAM) for In-field Detection of Particulate Organic Compounds. Atmospheric Environment.

Savage, P. B., Hashemi, M. M., Rovig, J., Weber, S., Hilton, B., Forouzan, M. M. (2017). Susceptibility of colistin-resistant, Gram-negative bacteria to antimicrobial peptides and ceragenins.. Antimicrob. Agents Chemother.

Linford, M. R., Cushman, C. V., Johnson, B. I., Martin, A., Lunt, B. M., Smith, N. J. (2017). “Eagle XG® Glass: Optical Constants from 196 – 1688 nm (0.735 - 6.32 eV) by Spectroscopic Ellipsometry. Surf. Sci. Spectra.