Chemistry and Biochemistry

2018

Tian, Y.; Decker, T. K.; McClellan, J. S.; Bennett, L.; Li, A.; De la Cruz, A.; Andrews, D.; Lammert, S. A.; Hawkins, A. R.; Austin, D.E. Improved Miniaturized Linear Ion Trap Mass Spectrometer Using Lithographically Patterned Plates and Tapered Ejection Slit. J. Am. Soc. Mass Spectrom. 2017, 29, 213−222.

1. Anupriya; Gustafson, E.; Mortensen, D. N.; Dearden, D. V. Quantitative Collision Cross-Sections from FTICR Linewidth Measurments: Improvements in Theory and Experiment. Am. Soc. Mass Spectrom. 2018, 29, 251-259. 

2. Aryal, B. R.; Westover, T. R.; Ranasinghe, D. R.; Calvopiña, D. G.; Uprety, B.; Harb, J. N.; Davis, R. C.; Woolley, A. T. Four Point Probe Electrical Measurements on Templated Gold Nanowires Formed on Single DNA Origami Tiles. Langmuir 2018, 34, 15069-15077.

3. Asplund, M.; Calvin, J. J.; Zhang, Y.; Huang, B.; Woodfield, B. F. Heat Capacity and Thermodynamic Functions of Silica-Doped γ-Al2O3. Journal of Chemical Thermodynamics 2018118, 165-174.

4. Averett, S. C.; Stanley, S. K.; Hanson, J. J.; Smith, S. J.; Patterson, J. E. Surface Spectroscopic Signatures of Mechanical Deformation in HDPEApplied Spectroscopy, 2018, 72(7), 1057-1068.

5. Bates, E. A.; Nikai, T.; Brennan K.C.; Charles, A.; Basbaum, A.; Ptacek, L. J.; Ahn, A. Sumatriptan Alleviates Mechanical and Thermal Allodynia in an Animal Behavioral Model of Nitroglycerin-Induced HeadacheCephalalgia 201030 (2), 170-178.

6. Beauchamp, M. J.; Gong, H.; Woolley, A. T.; Nordin, G. P. 3D Printed Microfluidic Features Using Dose cCntrol in X, Y, and Z Dimensions. Micromachines 2018, 9, 326.

7. Bozkurt-Gozel, C.; Hacioclu, M.; Savage, P. B. Investigation of the in vitro Antifungal and Antibiofilm Activities of Ceragenins CSA-8, CSA-13, CSA-44, CSA-131 and CSA-138 against Candida SpeciesDiag. Microbiol. Infect. Dis. 2018, 91, 324-330. 

8. Bozkurt-Gozel, C.; Oyardi, O.; Savage, P. B. Comparative in vitro Antimicrobial Activities of CSA-142 and CSA-192, Second-Generation Ceragenins, with CSA-13 against Various Microorganisms. J. Chemother. 2018, 30, 332-227.

9. Bucki, R.; Durnás, B, Watek, M; Piktel, W.; Cruz, K.; Wolak, P, Savage, P. B.; Janmey, P. A. Targeting Polyelectrolyte Networks in Purulent Body Fluids to Modulate Bactericidal Properties of Some AntibioticsInfect. Drug Resist. 2018, 11, 77-86. 

10. Calvin, J. J.; Asplund, M.; Akimbekov, Z.; Ayoub, G.; Katsensis, A. D.; Navrotsky, A.; , T.; Woodfield, B. F. Heat Capacity and Thermodynamic Functions of Crystalline and Amorphous Forms of the Metal Organic Framework Zinc 2-Ethylimidazolate, Zn(EtIm)2Journal of Chemical Thermodynamics 2018, 116, 341-351.

11. Calvin, J. J.; Asplund, M.; Zhang, Y.; Huang, B.; Woodfield, B. F. Heat Capacity and Thermodynamics Functions of Boehmite (AlOOH) and Silica-doped BoehmiteJournal of Chemical Thermodynamics 20181F18, 338-345.

12. Chatterjee, S.; Chapman, S.; Lunt, B.; Linford, M. Using Cross-Correlation with Pattern Recognition Entropy to Obtain Reduced Total Ion Current Chromatograms from Raw Liquid Chromatography-Mass Spectrometry DataBull. Chem. Soc. Jpn. 2018, 91, 1775-780.

13. Chatterjee, S.; Major, G. H.; Paull, B.; Rodriguez, E. S.; Kaykhaii, M.; Linford, M. Using Pattern Recognition Entropy to Select Mass Chromatograms to Prepare Total Ion Chromatograms from Raw LC-MS Data. J. Chrom. A. 2018, 1558, 21-28.


14. Chatterjee, S.; Singh, B.; Diwan, A.; Lee, Z. R.; Engelhard, M. H.; Terry, J.; Tolley, H. D.; Gallagher, N. B.; Linford, M. R. A Perspective on Two Chemometrics Tools: PCA and MCR, and Introduction of a New One: Pattern Recognition Entropy (PRE), as applied to XPS and ToF-SIMS depth Profiles of Organic and Inorganic MaterialsApplied Surface Science 2018, 433, 994-1017.

15. Chen, M. N.; Niu, M.; Calvin, J. J.; Asplund, M.; King, S. W.; Woodfield, B. F.; Navrotsky, A. Thermodynamics of Amorphous SiN(O)H Dielectric Films Synthesized by Plasma-enhanced Chemical Vapor Deposition. Journal of the American Ceramic Society 2018, 101, 2017-2027.

16. Chesnel, K.; Griner, D.; Smith, D.; Cai, Y.; Trevino, M.; Newbold, B.; Harrison, R. G.; Wang, T.; Liu, T.; Jal, E.; Reid, A. H. Unraveling Nanoscale Magnetic Ordering in Fe­34 Nanoparticle Assemblies via X-RaysMagnetochemistry 2018, 4, 42.

17. Cropper, P. M.; Eatough, D. J.; Overson, D. K.; Caka, F.; Cary, R. A.; Hansen, J. C. Use of a GC-MS Organic Aerosol Monitor for In-Field Detection of Fine Particulate Organic Compounds in Source ApportionmentJournal of the Air and Waste Management Association, 2018, 68 (5), 390-402.

18. Cushman, C. V.; Brüner, P.; Zakel, J.; Dahlquist, C.; Sturgell, B.; Grehl, T.; Lunt, B. M.; Banerjee, J.; Smith, N.; Linford, M. R. Low Energy Ion Scattering (LEIS) of As-Formed and Chemically Modified Display Glass: Significant Differences between Surface and Bulk Compositions as Revealed by LEIS Peak Fitting of the Al/Si EnvelopeApplied Surface Science 2018, 455, 18 - 31.

19. Decker, T. K.; Tian, Y.; McClellan, J. S.; Bennett, L.; Lammert, S. A.; Austin, D. E.; Hawkins, A. R. Optimal Fabrication Methods for Miniature Coplanar Ion Traps. Rapid Comm. Mass Spectrom. 2018, 32, 280−294.

20. Decker, T. K.; Zheng, Y.; McClellan, J. S.; Ruben, A. J.; Lammert, S. A.; Austin, D. E.; Hawkins, A. R. Double Resonance Ejection Using Novel RF Phase Tracking Circuitry in a Miniaturized Planar Linear Ion Trap Mass SpectrometerRapid Comm. Mass Spectrom2018, 32, 2024-2030. 

21. Dou, M.; Zhu, Y.; Liyu, A.; Liang, Y.; Chen, J.; Piehowski, P. D.; Xu, K.; Zhao, R.; Moore, R. J.; Atkinson, M. A.; Mathews, C. E.; Qian, W.-J.; Kelly, R. T.* Nanowell-Mediated Two-Dimensional Liquid Chromatography Enables Deep Proteome Profiling of <1000 Mammalian Cells. Chem. Sci. 2018, 9, 6944-6951.

22. Gong, H.; Woolley, A. T.; Nordin, G. P. 3D Printed High Density, Reversible, Chip-to-Chip Microfluidic InterconnectsLab Chip 201818, 639-647.

23. Gupta, V.; Kazarian, A. A.; Gaskell, B.; Paull, B.; Jensen, D. S.; Nesterenko, P. N.; Linford, M. R. Mixed-Mode Liquid Chromatography on Core Shell Stationary Phases Based on Layer-by-Layer Nanodiamond/Polyamine ArchitectureCurrent Chromatography 2018(1), 5-17.

24. Hacioglu, M.; Bozkurt-Guzel, C. B.; Savage, P. B.; Tan, A. S. B. Antifungal Susceptibilities, in vitro Production of Virulence Factors and Activities of Ceragenins against Candida spp. Isolated from Vulvovaginal CandidiasisMed. Micol. 2018,1-9. 

25. Hallac, J.; Brown, E.; Stavistski, R. G.; Harrison, M.; Argyle, M. D. In-Situ UV-Visible Assessment of Iron-Based High-Temperature Water-Gas Shift Catalysts Promoted with Lanthana: An Extent of Reduction StudyCatalysts 2018, 8, 63.

26. Hansen, L. D.; Popovic, M.; Tolley, H. D.; Woodfield, B. F. Laws of Evolution Parallel the Laws of Thermodynamics. Journal of Chemical Thermodynamics 2018124, 141-148.

27. Hansen, K. R.; Peterson, J. R.; Perego, A.; Shelley, M.; Olsen, C. R.; Perez, L. D.; Hogg, H. L.; Watt, R. K.; Colton, J. S. Lead Sulfide Quantum Dots inside Ferritin: Synthesis and Application to Photovoltaics. Applied Nanoscience 20188 (7), 1687-1699.

28. Hashemi, M. M.; Holden, B. S.; Taylor, M. F.; Wilson, J.; Coburn, J.; Hilton, B.; Nance, T.; Gubler, S.; Genberg, C.; Deng, S.; Savage, P. B. Antibacterial and Antifungal Activities of Poloxamer Micelles Containing Ceragenin CSA-131 on Ciliated TissuesMolecules 2018, 23, 596.  

29. Hashemi, M. M.; Mmuoegbulam, A. O.; Holden, B. S.; Coburn, J.; Wilson, J.; Taylor, M. F.; Reiley, J.; Baradaran, D.; Stenquist, T.; Deng, S.; Savage, P. B. Susceptibility of Multidrug-Resistant Bacteria, Isolated from Water and Plants in Nigeria, to CerageninsInternat. J. Environ. Res. Public Health 2018, 15, 2758. 

30. Hashemi, M. M.; Rovig, J.; Bateman, J.; Holden, B. S.; Modzelewski, T.; Gueorguieva, I.; von Dyck, M.; Bracken, R.; Genberg, C.; Deng, S.; Savage, P. B. Preclinical Testing of a Broad-Spectrum Antimicrobial Endotracheal Tube Coated with an Innate Immune Synthetic Mimic. J. Antimicrob. Chemother. 2018, 73, 143-150.  

31. Hashemi, M. M.; Rovig, J.; Holden, B. S.; Taylor, M. F.; Weber, S; Wilson, J.; Hilton, B.; Zaugg, A. L.; Ellis, S. W.; Yost, C. D.; Finnegan, P. M.; Kistler, C. K.; Berkow, E. L.; Deng, S.; Lockhart, S. R.; Peterson, M.; Savage, P. B. Ceragenins are Active against Drug-Resistant Candida auris Clinical Isolates in Planktonic and Biofilm FormsJ. Antimicrob. Chemother. 2018, 73, 1537-1545.  

32. Hickenlooper, S. M.; Harper, C. C.; Pope, B. L.; Mortensen, D. N.; Dearden, D. V. Barriers for Extrusion of a Guest from the Interior Binding Cavity of a Host: Gas Phase Experimental and Computational Results for Ion-capped Decamethylcucurbit[5]uril Complexes. Phys. Chem. A 2018, 122, 9224-9232. 

33. Higgs, J. M.; Warnick, K. F.; Austin, D. E. Field Optimization of Toroidal Ion Trap Mass Analyzers Using Toroidal Multipoles. Int. J. Mass Spectrom. 2018, 425, 10−15.

34. Jain, V.; Biesinger, M. C.; Linford, M. R. The Gaussian-Lorentzian Sum, Product, and Convolution (Voigt) Functions in the Context of Peak Fitting X-ray Photoelectron Spectroscopy (XPS) Narrow Scans. Applied Surface Science 2018, 447, 548 – 553.

35. Jung, M.; Kim, C.; Harrison, R. G. A Dual Sensor Selective for Hg2+ and Cysteine Detection. Sens Actuators: B Chem. 2018, 255, 2756-2763.

36. Knob, R.; Hanson, R. L.; Tateoka, O. B.; Wood, R. L.; Guerrero-Arguero, I.; Robison, R. A.; Pitt, W. G.; Woolley, A. T. Sequence-Specific Sepsis-Related DNA Capture and Fluorescent Labeling in Monoliths Prepared by Single-Step Photopolymerization in Microfluidic Devices. J. Chromatogr. A. 1562, 12-18 (2018).

37. Liang, Y.; Zhu, Y. Dou, M.; Xu, K.; Chu, R. K.; Chrisler, W. B.; Zhao, R.; Hixson, K. K.; Kelly, R. T.* Spatially Resolved Proteome Profiling of <200 cells from Tomato Fruit Pericarp by Integrating Laser-Capture Microdissection with Nanodroplet Sample Preparation. Anal. Chem., 2018, 90, 11106–11114.

38. Mills, R.; Cheng, T. L.; Mikulec, K.; Peacock, L.; Isaacs, D.; Genberg, C.; Savage, P. B.; Little, D. G.; Schindeler, A. CSA-90 Promotes Bone Formation and Mitigates Methicillin-Resistant Staphylococcus aureus Infection in a Rat Open Fracture Model. Clin. Orthoped. Rel. Res. 2018, 476, 1311-1323.  

39. Moser, T. H.; Mehta, H.; Park, C.; Kelly, R. T. Shokuhfar, T.; Evans, J. E. The Role of Irradiation History in Liquid Cell Transmission Electron Microscopy. Science Advances, 2018, 4, eaaq1202.

40. Nazari, S. H.; Tiempos-Flores, N.; Forson, K. G.; Bourdeau, J. E.; Michaelis, D. J. C–N Bond Formation from Allylic Alcohols Via Cooperative Nickel and Titanium Catalysis. J. Org. Chem. 201883, 10646–10654.

41. Nielsen, A. V.; Nielsen, J. B.; Sonker, M.; Knob, R.; Sahore, V.; Woolley, A. T. Microchip Electrophoresis Separation of a Panel of Preterm Birth Biomarkers. Electrophoresis 201839, 2300-2307.

42. Orton, D. J.; Tfaily, M. M.; Moore, R. J.; LaMarche, B. L.; Zheng, X.; Fillmore, T. L.; Chu, R. K.; Weitz, K. K.; Monroe, M. E.; Kelly, R. T.; Smith, R. D.; Baker, E. S. A Customizable Flow Injection System for Automated, High Throughput and Time Sensitive Ion Mobility Spectrometry and Mass Spectrometry Measurements. Anal. Chem. 2018, 90, 737–744.

43. Piktel, E.; Prokop, I.; Wnorowska, U.; Krol, G.; Ciesluk, M; Niemirowicz, K.; Savage, P. B.; Bucki R. Ceragenin CSA-13 as Free Molecules and Attached to Magnetic Nanoparticle Surfaces Induce Caspase-Dependent Apoptosis in Human Breast Cancer Cells via Disruption of Cell Oxidative Balance. Oncotarget 2018, 9, 21904-21920.

44. Rahmati; Huang, B.; Mortensen, M. K Jr.; Keyvanloo, K.; Fletcher, T. H.; Woodfield, B. F.; HEcker, W. C.; Argyle, M. D. Effect of Different Alumina Supports on Performance of Cobalt Fisher-Tropsch Catalysts. J. Catalysis 2018359, 92-100.

45. Rahmati; Huang, B.; Schofield, L. M.; Fletcher, T. H.; Woodfield, B. F.; Hecker, W. C.; Bartholomew, C. H.; Argyle, M. D. Effects of Ag Promotion and Preparation Method on Cobalt Fischer-Tropsch Catalysts Supported on Silica-Modified Alumina. J. Catalysis 2018362, 118-128.

46. Raymond, K. C.; Merrill, R. G.; Harrison, S. D.; Jarvis, R. J.; Rasmussen. The Nicotine Content of a Sample of E-Cigarette Liquid Manufactured in the United States. J. Addiction Med. 2018, 12, 127-131.

47. Ryan, J.; Kaspar, T.; Pantano, C.; Rice, J.; Trivelpiece, C.; Hyatt, N.; Corkhill, C.; Mann, C.; Hand, R.; Kirkham, M.; Crawford, C.; Jantzen, C.; Du, J.; Lu, Z.; Harrison, M.; Cushman, C.; Linford, M. R.; Smith, N. Physical and Optical Properties of the International Simple Glass. Accepted 2018 NPJ Materials Degradation.

48. Sahore, V.; Sonker, M.; Nielsen, A. V.; Knob, R.; Kumar, S.; Woolley, A. T. Automated Microfluidic Devices Integrating Solid-Phase Extraction, Fluorescent Labeling and Microchip Electrophoresis for Preterm Birth Biomarker Analysis. Anal. Bioanal. Chem. 2018410, 933-941.

49. Saini, G,; Trenchevska, O.; Howell, L.; Boyd, J.; Smith, D.; Jain, V.; Linford, M. R. Performance Comparison of Three Chemical Vapor Deposited Aminosilanes in Peptide Synthesis: Effects of Silane on Peptide Stability and Purity. Langmuir 2018, 34 (40), 11925–11932.


50. Sargazi, M.; Linford, M. R.; Kaykhaii, M. Liquid Crystals in Analytical Chemistry: A Review. Critical Reviews in Analytical Chemistry 2018

51. Schliesser, J. M.; Huang, B.; Sahu, S. K.; Navrotsky, A.; Woodfield, B. F. Experimental Heat Capacities, Excess Entropies, and Magnetic Properties of Bulk and Nano Fe 3 O 4 - Co 3 O 4 and Fe 3 O 4 -Mn 3 O 4 Spinel Solid Solutions. J. Solid State Chem. 2018259, 79-90.

52. Schmid, H.; Schneidawind, C.; Jahnke, S.; Kettermann, F.; Secker K.-A.; Duerr-Stoerzer, S.; Keppeler, H.; Kanz, L.; Savage, P. B.; Scheidawind, D. Culture-Expanded Human Invariant Natural Killer T Cells Suppress T-cell Alloreactivity and Eradicate Leukemia. Frontiers Immunol. 2018, 9, 1817. 

53. Shah, D.; Patel, D. I.; Roychowdhury, T.; Rayner, G. B.; O'Toole, N.; Baer, D. R.; Linford, M. R. A Tutorial on Interpreting X-ray Photoelectron Spectroscopy (XPS) Survey Spectra: Questions and Answers on Spectra from the Atomic Layer Deposition (ALD) of Al 2 O 3 on Silicon. Journal of Vacuum Science Technology B 2018, 36, 062902.

54. Shen, J.; Dearden, D. V. Recent Progress in Gas Phase Cucurbit[n]uril Chemistry. Isr. J. Chem. 2018, 58, 225-229. 

55. Shirts, R. B.; Kumbhani, S. R.; Burrell, E.; Hansen, J. C. An Improved Model to Calculate Equilibrium Constants for Formation of Peroxy Radical-Water Complexes. Theoretical Chemistry Accounts 2018, 137, 96. 

56. Sonker, M.; Parker, E. K.; Nielsen, A. V.; Sahore, V.; Woolley, A. T. Electrokinetically Operated Microfluidic Devices for Integrated Immunoaffinity Monolith Extraction and Electrophoretic Separation of Preterm Birth Biomarkers. Analyst 2018143, 224-231.

58. Tian, Y.; Decker, T. K.; McClellan, J. S.; Wu, Q. H.; De la Cruz, A.; Hawkins, A. R.; Austin, D. E. Experimental Observation of the Effects of Translational and Rotational Electrode Misalignment on a Planar Linear Ion Trap Mass SpectrometerJ. Am. Soc. Mass Spectrom. 2018, 29 (7), 1376-1385.

59. Voyton, C. M.; Morris, M. T.; Ackroyd, C. P.; Morris, J. C.; Christensen, K. A. FRET Flow Cytometry-Based High Throughput Screening Assay to Identify Disrupters of Glucose Levels in Trypanosoma Brucei. ACS Infectious Diseases 2018, 4 (7), 1058-1066.

60. Voyton C. M.; Qiu, Y.; Morris M. T.; Ackroyd P. C.; Suryadi J.; Crowe L.; Morris, J. C.; Christensen, K. A. A FRET Flow Cytometry Method for Monitoring Cytosolic and Glycosomal Glucose in Living Kinetoplastid Parasites. PLoS Negl Trop Dis  201812 (5): e0006523.

61. Wang, X. T.; Zheng, Y.; Shi, J.; Gong, X. Y.; Yue, J.; Han, W. W.; Jiang, Y.; Austin, D. E.; Fang, X.; Zhang, Z. Elucidating the Reaction Mechanisms between Triazine and Hydrogen Sulfide with pH Variation Using Mass Spectrometry. Analytical Chemistry 2018, 90, 11138-11145. 

62. Woolley, A. T. Be Unafraid … To Try Something New or Challenging. Anal. Bioanal. Chem. 2018410, 6973-6974 

63. Woolley, A. T. Effective Response to Peer Review. Anal. Bioanal. Chem. 2018410, 2863-2864.

64. Xiao, Q.; Bécar, N. A.; Brown, N. P.; Smith, M. S.; Stern, K. L.; Draper, S. R. E.; Thompson, K. P.;
Price, J. L.* Stapling of Two PEGylated Side Chains Increases the Conformational Stability of the WW Domain via an Entropic Effect. Org. Biomol. Chem. 2018, 16, 8933–8939.

65. Zhu, Y.; Clair, G.; Chrisler, W. B.; Shen, Y.; Zhao, R.; Shukla, A. K.; Moore, R. J.; Misra, R. S.; Pryhuber, G. S.; Smith, R. D.; Ansong, C.; Kelly, R. T.* Proteomic Analysis of Single Mammalian Cells Enabled by Microfluidic Nanodroplet Sample Preparation and Ultrasensitive nanoLC-MSAngew. Chem. Int. Ed. 2018, 57, 12370-12374.

66. Zhu, Y.; Dou, M.; Piehowski, P. D.; Liang, Y.; Wang, F.; Chu, R. K.; Chrisler, W. B.; Smith, J. N.; Schwarz, K. N.; Shen, Y.; Shukla, A. K.; Moore, R. J.; Smith, R. D.; Qian, W.-J.; Kelly, R. T.* Spatially Resolved Proteome Mapping of Laser Capture Microdissected Tissue with Automated Sample Transfer to NanodropletsMolecular & Cellular Proteomics, 2018, 17, 1864–1874.

67. Zhu, Y.; Piehowski, P. D.; Kelly, R. T.; Qian, W.-J. Nanoproteomics Comes of AgeExpert Review of Proteomics, 2018, 15, 865–871.

68. Zhu, Y.; Piehowski, P. D.; Zhao, R.; Chen, J.; Shen, Y.; Moore, R. J.; Shukla, A. K.; Petyuk, V.; Campbell-Thompson, M.; Mathews, C. E.; Smith, R. D.; Qian, W.-J.; Kelly, R. T.* Nanodroplet Processing Platform for Deep and Quantitative Proteome Profiling of 10–100 Mammalian Cells. Nat. Commun., 2018, 9, 882.

69. Zhu, Y.; Podolak, J.; Zhao, R.; Shukla, A. K.; Moore, R. J.; Thomas, G. V.; Kelly, R. T.* Proteome Profiling of 1 to 5 Spiked Circulating Tumor Cells Isolated from Whole Blood using Immunodensity Enrichment, Laser Capture Microdissection, Nanodroplet Sample Processing and Ultrasensitive nanoLC-MSAnal. Chem., 2018, 90, 11756–11759.

70. Zhu, Y.; Zhao, R.; Piehowski, P. D.; Moore, R. J.; Shen, Y.; Lim, S.; Orphan, V.; Pasa-Tolic, L.; Qian, W.-J.; Smith, R. D.; Kelly, R. T.* Sub-Nanogram Proteomics: Impact of LC Column Selection, MS Instrumentation and Data Analysis Strategy on Proteome Coverage for Trace SamplesInt. J. Mass Spectrom., 2018, 427, 4–10.