Chemistry and Biochemistry

2018

Anupriya; Gustafson, E.; Mortensen, D. N.; Dearden, D. V. J. "Quantitative Collision Cross-Sections from FTICR Linewidth Measurments: Improvements in Theory and Experiment, Am. Soc. Mass Spectrom. 2018, 29, 251-259. doi: 10.1007/s13361-017-1738-4.
Aryal, B.R.; Westover, T.R.; Ranasinghe, D.R.; Calvopiña, D.G.; Uprety, B.; Harb, J.N.; Davis, R.C.; Woolley, A.T. Four Point Probe Electrical Measurements on Templated Gold Nanowires Formed on Single DNA Origami Tiles. Langmuir 34, 15069-15077 (2018).
Asplund, J.J. Calvin, Y. Zhang, B. Huang, and B.F. Woodfield, "Heat Capacity and Thermodynamic Functions of Silica-Doped γ-Al 2 O 3 ", Journal of Chemical Thermodynamics 118, 165-174 (2018).
Beauchamp, M.J.; Gong, H.; Woolley, A.T.; Nordin, G.P. 3D printed microfluidic features using dose control in X, Y, and Z dimensions. Micromachines 9, 326 (2018).
Bozkurt-Gozel, C.; Hacioclu, M.; Savage, P. B. Diag. Microbiol. Infect. Dis. 2018, 91, 324-330. Investigation of the in vitro antifungal and antibiofilm activities of ceragenins CSA-8, CSA-13, CSA-44, CSA-131 and CSA-138 against Candida species.Wang, X.T.; Zheng, Y.; Shi, J.; Gong, X.Y.; Yue, J.; Han, W.W.; Jiang, Y.; Austin, D.E.; Fang, X.; Zhang, Z.P. Elucidating the Reaction Mechanisms between Triazine and Hydrogen Sulfide with pH Variation Using Mass Spectrometry, Analytical Chemistry, 2018, 90, 11138-11145.
Bozkurt-Gozel, C.; Oyardi, O.; Savage, P. B. Comparative in vitro antimicrobial activities of CSA-142 and CSA-192, second-generation ceragenins, with CSA-13 against various microorganisms. J. Chemother. 2018, 30, 332-227.Higgs, J.; Warnick, K.F.; Austin, D.E. Field optimization of toroidal ion trap mass analyzers using toroidal multipoles. Int. J. Mass Spectrom,, 2018, 425, 10-15.
Bucki, R.; Durnás, B, Watek, M; Piktel, W.; Cruz, K.; Wolak, P, Savage, P. B.; Janmey, P. A. Infect. Drug Resist. 2018, 11, 77-86.  Targeting polyelectrolyte networks in purulent body fluids to modulate bactericidal properties of some antibiotics.
J.J. Calvin, M. Asplund, Y. Zhang, B. Huang, and B.F. Woodfield, "Heat Capacity and Thermodynamics Functions of Boehmite (AlOOH) and Silica-doped Boehmite", Journal of Chemical Thermodynamics 118, 338-345 (2018).
J.J. Calvin, M. Asplund, Z. Akimbekov, G. Ayoub, A.D. Katsenis, A. Navrotsky, T. Friscic, and B.F. Woodfield, "Heat Capacity and Thermodynamic Functions of Crystalline and Amorphous Forms of the Metal Organic Framework Zinc 2-Ethylimidazolate, Zn(EtIm) 2 ", Journal of Chemical Thermodynamics 116, 341-351 (2018).
Shiladitya Chatterjee, Bhupinder Singh, Anubhav Diwan, Zheng Rong Lee, Mark H. Engelhard, Jeff Terry, H. Dennis Tolley, Neal B. Gallagher, Matthew R. Linford “A perspective on two chemometrics tools: PCA and MCR, and introduction of a new one: Pattern recognition entropy (PRE), as applied to XPS and ToF-SIMS depth profiles of organic and inorganic materials” Applied Surface Science 2018, 433, 994 - 1017.
Chatterjee, Shiladitya; Chapman, Sean; Lunt, Barry; Linford, Matthew ‘Using Cross-Correlation with Pattern Recognition Entropy to Obtain Reduced Total Ion Current Chromatograms from Raw Liquid Chromatography-Mass Spectrometry Data’ Bull. Chem. Soc. Jpn. 2018, 91, 1775 – 1780.
Shiladitya Chatterjee, George H. Major, Massoud Kaykhaii, Matthew Linford “Using Pattern Recognition Entropy to Select Mass Chromatograms to Prepare Total Ion Chromatograms from Raw LC-MS Data” J. Chrom. A. 2018, 1558, 21 – 28.
Shiladitya Chatterjee and Matthew R. Linford “Reordered (Sorted) Spectra. A Tool for Understanding Pattern Recognition Entropy (PRE) and Spectra in General” Bull. Chem. Soc. Jpn. 2018, 91, 824 – 828. doi:10.1246/bcsj.20180027.
Chen, M. Niu, J.J. Calvin, M. Asplund, S.W. King, B.F. Woodfield, and A. Navrotsky, "Thermodynamics of Amorphous SiN(O)H Dielectric Films Synthesized by Plasma-enhanced Chemical Vapor Deposition", Journal of the American Ceramic Society 101, 2017-2027 (2018).
Chesnel, D. Griner, D. Smith, Y. Cai, M. Trevino, B. Newbold, R. G. Harrison, T. Wang, T. Liu, E. Jal, A. Reid, “Unraveling nanoscale magnetic ordering in Fe­34 nanoparticle assemblies via X-rays” Magnetochemistry, 2018, 4, 42.
Cropper, Paul M.; Eatough, Delbert J.; Overson, Devon K.; Caka, Fern; Cary, Robert A.; Hansen, Jaron C. “Use of a GC-MS Organic Aerosol Monitor for In-Field Detection of Fine Particulate Organic Compounds in Source Apportionment”, Journal of the Air and Waste Management Association, 2018, 68(5), 390-402
Cody V. Cushman, Philipp Bru╠łner, Julia Zakel, Cameron Dahlquist, Brandon Sturgell, Thomas Grehl, Barry M. Lunt, Joy Banerjee, Nicholas Smith, Matthew R. Linford “Low Energy Ion Scattering (LEIS) of As-Formed and Chemically Modified Display Glass: Significant Differences between Surface and Bulk Compositions as Revealed by LEIS Peak Fitting of the Al/Si Envelope” Applied Surface Science 2018, 455, 18 - 31.
Decker, T.K.; Tian, Y.; McClellan, J.S.; Bennett, L.; Lammert, S.A.; Austin, D.E.; Hawkins, A.R. Optimal Fabrication Methods for Miniature Coplanar Ion Traps, Rapid Comm. Mass Spectrom. 2018, 32, 280−294.
Decker, T.K.; Zheng, Y.; McClellan, J.S.; Ruben, A.J.; Lammert, S.A.; Austin, D.E.; Hawkins, A.R. Double Resonance Ejection Using Novel RF Phase Tracking Circuitry in a Miniaturized Planar Linear Ion Trap Mass Spectrometer, Rapid Comm. Mass Spectrom., 2018, 32, 2024-2030. doi: 10.1002/rcm.8267.
Dou, M.; Zhu, Y.; Liyu, A.; Liang, Y.; Chen, J.; Piehowski, P. D.; Xu, K.; Zhao, R.; Moore, R. J.; Atkinson, M. A.; Mathews, C. E.; Qian, W.-J.; Kelly, R. T.* Nanowell-mediated two-dimensional liquid chromatography enables deep proteome profiling of <1000 mammalian cells, Chem. Sci., 2018, 9, 6944-6951.
Gong, H.; Woolley, A.T.; Nordin, G.P. 3D printed high density, reversible, chip-to-chip microfluidic interconnects. Lab Chip 18, 639-647 (2018).
Vipul Gupta, Brett Paull, Matthew Linford etc. &quot;Mixed-mode liquid chromatography on core shell stationary phases based on layer-by-layer nanodiamond/polyamine architecture&quot; Accepted Current Chromatography.
Hacioglu, M.; Bozkurt-Guzel, C. B.; Savage, P. B.; Tan, A. S. B. Med. Micol. 2018, doi 10.1093, 1-9. Antifungal susceptibilities, in vitro production of virulence factors and activities of ceragenins against Candidaspp. isolated from vulvovaginal candidiasis.
Hallac, J. Brown, E. Stavistski, R. G. Harrison, M. Argyle “In-Situ UV-Visible Assessment of Iron-Based High-Temperature Water-Gas Shift Catalysts Promoted with Lanthana: An Extent of Reduction Study” Catalysts 2018, 8, 63, doi:10.3390/catal8020063.
L.D. Hansen, M. Popovic, D.Tolley, and B.F. Woodfield, &quot;Laws of Evolution Parallel the Laws of Thermodynamics&quot;, Journal of Chemical Thermodynamics 124, 141-148 (2018).
Hansen, K. R., Peterson, J. R., Perego, A., Shelley, M., Olsen, C. R., Perez, L. D., Hogg, H. L., Watt, R. K., Colton, J. S., (2018) Leas sulfide quantum dots inside ferritin: synthesis and application to photovoltaics.  Applied Nanoscience, 8(7), 1687-1699.
Hashemi, M. M.; Holden, B. S.; Taylor, M. F.; Wilson, J.; Coburn, J.; Hilton, B.; Nance, T.; Gubler, S.; Genberg, C.; Deng, S.; Savage, P. B. Molecules 2018, 23, 596.  Antibacterial and antifungal activities of poloxamer micelles containing ceragenin CSA-131 on ciliated tissues.
Hashemi, M. M.; Mmuoegbulam, A. O.; Holden, B. S.; Coburn, J.; Wilson, J.; Taylor, M. F.; Reiley, J.; Baradaran, D.; Stenquist, T.; Deng, S.; Savage, P. B. Internat. J. Environ. Res. Public Health 2018, 15, 2758. Susceptibility of multidrug-resistant bacteria, isolated from water and plants in Nigeria, to ceragenins.
Hashemi, M. M.; Rovig, J.; Bateman, J.; Holden, B. S.; Modzelewski, T.; Gueorguieva, I.; von Dyck, M.; Bracken, R.; Genberg, C.; Deng, S.; Savage, P. B. J. Antimicrob. Chemother. 2018, 73, 143-150.  Preclinical testing of a broad-spectrum antimicrobial endotracheal tube coated with an innate immune synthetic mimic.
Hashemi, M. M.; Rovig, J.; Holden, B. S.; Taylor, M. F.; Weber, S; Wilson, J.; Hilton, B.; Zaugg, A. L.; Ellis, S. W.; Yost, C. D., Finnegan, P. M.; Kistler, C. K.; Berkow, E. L.; Deng, S.; Lockhart, S. R.; Peterson, M.; Savage, P. B. J. Antimicrob. Chemother. 2018, 73, 1537-1545.  
Hickenlooper, Samuel M.; Harper, Conner C.; Pope, Brigham L.; Mortensen, Daniel N.; Dearden, David V. J. “Barriers for Extrusion of a Guest from the Interior Binding Cavity of a Host: Gas Phase Experimental and Computational Results for Ion-capped Decamethylcucurbit[5]uril Complexes,” Phys. Chem. A 2018, 122, 9224-9232. doi: 10.1021/acs.jpca.8b08031
Higgs, J.M.; Warnick, K.F.; Austin, D.E. Field optimization of toroidal ion trap mass
analyzers using toroidal multipoles, Int. J. Mass Spectrom. 2018, 425, 10−15.
Varun Jain, Mark C. Biesinger, Matthew Linford “The Gaussian-Lorentzian Sum, Product, and Convolution (Voigt) Functions in the Context of Peak Fitting X-ray Photoelectron Spectroscopy (XPS) Narrow Scans” Applied Surface Science 2018, 447, 548 – 553.
M. Jung, C. Kim, R. G. Harrison “A Dual Sensor Selective for Hg2+ and Cysteine Detection” Sens Actuators: B Chem. 2018, 255, 2756-2763.
Knob, R.; Hanson, R.L.; Tateoka, O.B.; Wood, R.L.; Guerrero-Arguero, I.; Robison, R.A.; Pitt, W.G.; Woolley, A.T. Sequence-specific sepsis-related DNA capture and fluorescent labeling in monoliths prepared by single-step photopolymerization in microfluidic devices. J. Chromatogr. A. 1562, 12-18 (2018).
Liang, Y.; Zhu, Y. Dou, M.; Xu, K.; Chu, R. K.; Chrisler, W. B.; Zhao, R.; Hixson, K. K.; Kelly, R. T.* Spatially resolved proteome profiling of <200 cells from tomato fruit pericarp by integrating laser-capture microdissection with nanodroplet sample preparation, Anal. Chem., 2018, 90, 11106–11114.
Mills, R.; Cheng, T. L.; Mikulec, K.; Peacock, L.; Isaacs, D.; Genberg, C.; Savage, P. B.; Little, D. G.; Schindeler, A. Clin. Orthoped. Rel. Res. 2018, 476, 1311-1323.  CSA-90 promotes bone formation and mitigates methicillin-resistant Staphylococcus aureus infection in a rat open fracture model.
Moser, T. H.; Mehta, H.; Park, C.; Kelly, R. T. Shokuhfar, T.; Evans, J. E. The Role of Irradiation History in Liquid Cell Transmission Electron Microscopy, Science Advances, 2018, 4, eaaq1202.
Nazari, S. H.; Tiempos-Flores, N.; Forson, K. G.; Bourdeau, J. E.; Michaelis, D. J. “C–N Bond Formation from Allylic Alcohols Via Cooperative Nickel and Titanium Catalysis.” J. Org. Chem. 201883, 10646–10654.
Nielsen, A.V.; Nielsen, J.B.; Sonker, M.; Knob, R.; Sahore, V.; Woolley, A.T. Microchip Electrophoresis Separation of a Panel of Preterm Birth Biomarkers. Electrophoresis 39, 2300-2307 (2018).
Orton, D. J.; Tfaily, M. M.; Moore, R. J.; LaMarche, B. L.; Zheng, X.; Fillmore, T. L.; Chu, R. K.; Weitz, K. K.; Monroe, M. E.; Kelly, R. T.; Smith, R. D.; Baker, E. S. A Customizable Flow Injection System for Automated, High Throughput and Time Sensitive Ion Mobility Spectrometry and Mass Spectrometry Measurements, Anal. Chem., 2018, 90, 737–744.

Piktel, E.; Prokop, I.; Wnorowska, U.; Krol, G.; Ciesluk, M; Niemirowicz, K.; Savage, P. B.; Bucki R. Oncotarget 2018, 9, 21904-21920. Ceragenin CSA-13 as free molecules and attached to magnetic nanoparticle surfaces induce caspase-dependent apoptosis in human breast cancer cells via disruption of cell oxidative balance.

Rahmati, B. Huang, L.M. Schofield, T.H. Fletcher, B.F. Woodfield, W.C. Hecker, C.H. Bartholomew, and M.D. Argyle, &quot;Effects of Ag promotion and preparation method on cobalt Fischer-Tropsch catalysts supported on silica-modified alumina&quot;, J. Catalysis 362, 118-128 (2018).
Rahmati, B. Huang, M.K. Mortensen Jr., K. Keyvanloo, T.H. Fletcher, B.F. Woodfield, W.C. Hecker, and M.D. Argyle, &quot;Effect of Different Alumina Supports on Performance of Cobalt Fisher-Tropsch Catalysts&quot;, J. Catalysis 359, 92-100 (2018).
Raymond, K. C. Merrill, R. G. Harrison, S. D. Jarvis, R. J. Rasmussen, “The nicotine content of a sample of e-cigarette liquid manufactured in the United States” J. Addiction Med., 2018, 12, 127-131.
Joseph Ryan, Tiffany Kaspar, Carlo Pantano, Jarrett Rice, Cory Trivelpiece, Neil Hyatt, Claire Corkhill, Colleen Mann, Russell Hand, Michael Kirkham, Charles Crawford, carol jantzen, Jincheng ‎ Du, Xiaonan Lu, Mike Harrison, Cody Cushman, Matthew Linford, Nicholas Smith “Physical and optical properties of the International Simple Glass”. Accepted 2018 npj Materials Degradation
Sahore, V.; Sonker, M.; Nielsen, A.V.; Knob, R.; Kumar, S.; Woolley, A.T. Automated Microfluidic Devices Integrating Solid-Phase Extraction, Fluorescent Labeling and Microchip Electrophoresis for Preterm Birth Biomarker Analysis. Anal. Bioanal. Chem. 410, 933-941 (2018).
Saini, Gaurav; Trenchevska, Olgica; Howell, Loren; Boyd, James; Smith, David; Jain Varun; Linford, Matthew “Performance Comparison of Three Chemical Vapor Deposited Aminosilanes in Peptide Synthesis: Effects of Silane on Peptide Stability and Purity” Langmuir 2018, 34 (40), 11925–11932.
Mona Sargazi , Matthew R. Linford, and Massoud Kaykhaii “Liquid Crystals in Analytical Chemistry: A Review” CRITICAL REVIEWS IN ANALYTICAL CHEMISTRY
J.M. Schliesser, B. Huang, S.K. Sahu, A. Navrotsky, and B.F. Woodfield, &quot;Experimental Heat Capacities, Excess Entropies, and Magnetic Properties of Bulk and Nano Fe 3 O 4 - Co 3 O 4 and Fe 3 O 4 -Mn 3 O 4 Spinel Solid Solutions&quot;, J. Solid State Chem. 259, 79-90 (2018).
Schmid, H.; Schneidawind, C.; Jahnke, S.; Kettermann, F.; Secker K.-A.; Duerr-Stoerzer, S.; Keppeler, H.; Kanz, L.; Savage, P. B.; Scheidawind, D. Frontiers Immunol. 2018, 9, 1817. Culture-expanded human invariant natural killer T cells suppress T-cell alloreactivity and eradicate leukemia.
Dhruv Shah, Dhananjay I. Patel, Tuhin Roychowdhury, G. Bruce Rayner, Noel O’Toole, Donald R. Baer, Matthew R. Linford “A Tutorial on Interpreting X-ray Photoelectron Spectroscopy (XPS) Survey Spectra: Questions and Answers on Spectra from the Atomic Layer Deposition (ALD) of Al 2 O 3 on Silicon” Journal of Vacuum Science &amp; Technology B 2018, 36, 062902;
Shawn C. Averett, Steven K. Stanley, Joshua J. Hanson, Stacey J. Smith, James E. Patterson; Surface Spectroscopic Signatures of Mechanical Deformation in HDPE. Applied Spectroscopy, 2018, 72(7), 1057-1068.
Shen, Jiewen; Dearden, David V. “Recent Progress in Gas Phase Cucurbit[n]uril Chemistry,” Isr. J. Chem. 2018, 58, 225-229. doi: 10.1002/ijch.201700095. 

Shirts, Randall B.; Kumbhani, Sambhav R.; Burrell, Emily; Hansen, Jaron C. “An Improved Model to Calculate Equilibrium Constants for Formation of Peroxy Radical-Water Complexes”, Theoretical Chemistry Accounts, 2018, 137:96. https://doi.org/10.1007/s00214-018-2262-8

Sonker, M.; Parker, E.K.; Nielsen, A.V.; Sahore, V.; Woolley, A.T. Electrokinetically Operated Microfluidic Devices for Integrated Immunoaffinity Monolith Extraction and Electrophoretic Separation of Preterm Birth Biomarkers. Analyst 143, 224-231 (2018).
Tian, Y.; Decker, T.K.; McClellan, J.S.; Wu, Q.H.; De la Cruz, A.; Hawkins, A.R.; Austin, D.E. Experimental Observation of the Effects of Translational and Rotational Electrode Misalignment on a Planar Linear Ion Trap Mass Spectrometer, J. Am. Soc. Mass Spectrom., 2018, 29, 1376-1385.
Tian, Y.; Decker, T.K.; McClellan, J.S.; Bennett, L.; Li, A.; De la Cruz, A.; Andrews, D.; Lammert, S.A.; Hawkins, A.R.; Austin, D.E. Improved miniaturized linear ion trap mass spectrometer using lithographically patterned plates and tapered ejection slit, J. Am. Soc. Mass Spectrom. 2018, 29, 213−222.
Voyton, Charles M., et al. "FRET Flow Cytometry-Based High Throughput Screening Assay to Identify Disrupters of Glucose Levels in Trypanosoma Brucei." ACS Infectious Diseases, vol. 4, no. 7, 2018, pp. 1058-1066, https://doi.org/10.1021/acsinfecdis.8b00058, doi:10.1021/acsinfecdis.8b00058.
Voyton CM, Qiu Y, Morris MT, Ackroyd PC, Suryadi J, Crowe L, et al. (2018) A FRET flow cytometry method for monitoring cytosolic and glycosomal glucose in living kinetoplastid parasites. PLoS Negl Trop Dis 12(5): e0006523. https://doi.org/10.1371/journal.pntd.0006523
Woolley, A.T. Editorial: Be Unafraid … To Try Something New or Challenging. Anal. Bioanal. Chem. 410, 6973-6974 (2018).
Woolley, A.T. Editorial: Effective Response to Peer Review. Anal. Bioanal. Chem. 410, 2863-2864 (2018).
Xiao, Q.; Bécar, N.A.; Brown, N.P.; Smith, M.S.; Stern, K.L.; Draper, S.R.E.; Thompson, K.P.;
Price, J.L.* “Stapling of two PEGylated side chains increases the conformational stability of the
WW domain via an entropic effect.” Org. Biomol. Chem. 2018, 16, 8933–8939.
 Zhu, Y.; Clair, G.; Chrisler, W. B.; Shen, Y.; Zhao, R.; Shukla, A. K.; Moore, R. J.; Misra, R. S.; Pryhuber, G. S.; Smith, R. D.; Ansong, C.; Kelly, R. T.* Proteomic analysis of single mammalian cells enabled by microfluidic nanodroplet sample preparation and ultrasensitive nanoLC-MS, Angew. Chem. Int. Ed., 2018, 57, 12370-12374.
Zhu, Y.; Dou, M.; Piehowski, P. D.; Liang, Y.; Wang, F.; Chu, R. K.; Chrisler, W. B.; Smith, J. N.; Schwarz, K. N.; Shen, Y.; Shukla, A. K.; Moore, R. J.; Smith, R. D.; Qian, W.-J.; Kelly, R. T.* Spatially resolved proteome mapping of laser capture microdissected tissue with automated sample transfer to nanodroplets, Molecular & Cellular Proteomics, 2018, 17, 1864–1874.
Zhu, Y.; Piehowski, P. D.; Kelly, R. T.; Qian, W.-J. Nanoproteomics Comes of Age, Expert Review of Proteomics, 2018, 15, 865–871.
Zhu, Y.; Piehowski, P. D.; Zhao, R.; Chen, J.; Shen, Y.; Moore, R. J.; Shukla, A. K.; Petyuk, V.; Campbell-Thompson, M.; Mathews, C. E.; Smith, R. D.; Qian, W.-J.; Kelly, R. T.* Nanodroplet processing platform for deep and quantitative proteome profiling of 10–100 mammalian cells, Nat. Commun., 2018, 9, 882.
Zhu, Y.; Podolak, J.; Zhao, R.; Shukla, A. K.; Moore, R. J.; Thomas, G. V.; Kelly, R. T.* Proteome profiling of 1 to 5 spiked circulating tumor cells isolated from whole blood using immunodensity enrichment, laser capture microdissection, nanodroplet sample processing and ultrasensitive nanoLC-MS, Anal. Chem., 2018, 90, 11756–11759.
Zhu, Y.; Zhao, R.; Piehowski, P. D.; Moore, R. J.; Shen, Y.; Lim, S.; Orphan, V.; Pasa-Tolic, L.; Qian, W.-J.; Smith, R. D.; Kelly, R. T.* Sub-Nanogram Proteomics: Impact of LC Column Selection, MS Instrumentation and Data Analysis Strategy on Proteome Coverage for Trace Samples, Int. J. Mass Spectrom., 2018, 427, 4–10.